A document, sent on March 31 by Fahmy to a FIFA investigations committee and seen by Reuters, accuses Ahmad of ordering his secretary-general to pay $20,000 bribes into accounts of African football association presidents.
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The document also accused Ahmad of costing CAF an extra $830,000 by ordering equipment via a French intermediary company called Tactical Steel.
Furthermore, it accuses him of harassing four female CAF staff, whom it did not name; violating statutes to increase Moroccan representation within the organisation; and over-spending more than $400,000 of CAF money on cars in Egypt and Madagascar, where a satellite office has been set up for him.
Senior CAF officials, speaking on condition of anonymity, said Fahmy was fired in reprisal for compiling the document with the allegations against Ahmad, from Madagascar, who took the top African football post two years ago.
CAF confirmed to Reuters that Fahmy lost his job at an executive committee meeting in Cairo on Thursday, prior to the draw for the Africa Cup of Nations finals.
The CAF case is potentially problematic for FIFA president Gianni Infantino – set to be re-elected unopposed in June for a four-year term – as Ahmad is one of his deputies.
FIFA declined comment.